PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g22980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 114aa    MW: 13434.9 Da    PI: 11.5134
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g22980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-072351447
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++ k  G+g+Wk I++    ++t+ q+ s+ qky
   Vang06g22980.1  2 CGLKNVGKGNWKEISKNYVRTKTPTQVASHAQKY 35
                     788999*************9*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.882140IPR017930Myb domain
CDDcd001671.74E-4136No hitNo description
SuperFamilySSF466891.54E-8240IPR009057Homeodomain-like
PfamPF002491.1E-5235IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.0E-8338IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
LCGLKNVGKG NWKEISKNYV RTKTPTQVAS HAQKYFLRIS AFETRKRRRS LFDIPLVRFY  60
PKLSLLFHTA SLFFLHFFTL SMFMDMAGRR CSFKTSFTLK NLIPKPHFRI YTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14448RKRRR
24449RKRRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145462.11e-33hypothetical protein PHAVU_007G241200g, partial
SwissprotQ8S9H78e-16DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0S3STS51e-33A0A0S3STS5_PHAAN; Uncharacterized protein
TrEMBLV7BLI51e-33V7BLI5_PHAVU; Uncharacterized protein (Fragment)
STRINGGLYMA10G23084.14e-29(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1686178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.17e-21MYB_related family protein